Dynamic homology is an intriguing concept, though getting from the general notion of optimizing character correspondence (inapplicables, indels) and phylogeny simultaneously to a fully realized implementation is not trivial. In this week’s reading we examine a paper by Ward Wheeler who has promoted this approach with a strong emphasis on parsimony optimization.
Wheeler, W.C. 2006. Dynamic homology and the likelihood criterion. Cladistics 22: 157-170. Available here.
P.s.: Posted retrospectively for March 28, 2014.